PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23860
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 165aa    MW: 18968.5 Da    PI: 10.3105
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23860genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.9e-0580102123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C++Cg+ F+    L  H+r+H
  Tp57577_TGAC_v2_mRNA23860  80 HECSICGQEFKLGQALGGHMRRH 102
                                78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.77E-677104No hitNo description
PfamPF139121.9E-980103IPR007087Zinc finger, C2H2
PROSITE profilePS501579.80680107IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MKLCFTNIKH SHVQAYNTHD EETETKRRKR EHRFSNKSNA TLFSSYPTKQ KNIIFSXXXX  60
XIDSEEAKKV NINNNKPKMH ECSICGQEFK LGQALGGHMR RHRINNEGSS INYQVITKSS  120
PVLKRSNSKR IIMCLELDLN LTPLENDLKL LFGNKAPRVD LSLF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468306.17e-59C2H2 type zinc finger transcription factor family protein
SwissprotQ9SLD43e-21ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A072VLR48e-59A0A072VLR4_MEDTR; C2H2 type zinc finger transcription factor family protein
STRINGGLYMA13G19570.11e-41(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.11e-22C2H2 family protein